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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
12
ChIP-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
24
Transcription
12
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
12
February, 2020
8
November, 2017
3
May, 2019
2
March, 2020
2
November, 2018
2
October, 2017
2
October, 2019
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
80
Homo sapiens
Biosample type
62
tissue
18
primary cell
Organ
791
pancreas
661
liver
603
connective tissue
458
adipose tissue
428
epithelium
324
kidney
290
heart
159
bone element
159
vasculature
154
blood vessel
115
artery
80
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
target.investigated_as!!
histone
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
80 results
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DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
temporal lobe
1
2
1
Ammon's horn
1
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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