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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
35
DNA accessibility
12
Transcription
6
DNA binding
3
3D chromatin structure
Target of assay
166
histone
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
16
July, 2019
6
November, 2017
2
November, 2018
1
October, 2017
1
October, 2019
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
56
Homo sapiens
Biosample type
39
tissue
17
primary cell
Organ
539
liver
535
connective tissue
481
pancreas
423
adipose tissue
211
epithelium
122
heart
101
kidney
87
vasculature
83
blood vessel
65
artery
58
bone element
56
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
18
embryo
18
ureter
10
spleen
7
nerve
5
eye
3
vein
1
pericardium
Project
56
AMP
Genome assembly (visualization)
49
GRCh38
44
hg19
Lab
56
AMP-T2D consortium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
14
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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