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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
98
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
12
February, 2020
12
October, 2019
11
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
136
bam
114
bigWig
95
bed narrowPeak
92
bigBed narrowPeak
61
tagAlign
38
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
166
Homo sapiens
Biosample type
148
tissue
18
primary cell
Organ
845
pancreas
719
liver
634
connective tissue
467
adipose tissue
465
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
166
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
108
GRCh38
70
hg19
Lab
166
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
target.investigated_as!
narrow histone mark
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
13
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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