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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
83
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
30
June, 2019
18
July, 2019
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
120
bam
101
bigWig
82
bed narrowPeak
79
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
151
Homo sapiens
Biosample type
133
tissue
18
primary cell
Organ
872
pancreas
731
liver
651
connective tissue
479
adipose tissue
471
epithelium
335
kidney
313
heart
174
vasculature
169
blood vessel
159
bone element
151
brain
132
artery
102
limb
78
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
95
GRCh38
57
hg19
Lab
151
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
month_released!
May, 2019
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
substantia nigra
10
1
cingulate gyrus
9
+ See 28 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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