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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
79
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
160
histone
160
histone modification
narrow histone mark
55
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
56
November, 2017
28
June, 2019
May, 2019
16
July, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
114
bam
94
bigWig
78
bed narrowPeak
75
bigBed narrowPeak
64
tagAlign
35
bed broadPeak
32
bed bed3+
31
bigBed broadPeak
26
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
143
Homo sapiens
Biosample type
133
tissue
10
primary cell
Organ
872
pancreas
731
liver
651
connective tissue
479
adipose tissue
epithelium
338
heart
335
kidney
174
vasculature
169
blood vessel
159
bone element
151
brain
132
artery
102
limb
78
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
91
GRCh38
49
hg19
Lab
143
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
month_released!
May, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
substantia nigra
10
1
cingulate gyrus
9
+ See 28 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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