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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
7
RRBS
4
Hi-C
4
small RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
16
Transcription
7
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
80
May, 2022
60
November, 2017
53
February, 2023
50
September, 2018
46
June, 2019
38
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
July, 2019
24
May, 2021
22
May, 2019
21
August, 2017
19
September, 2020
14
October, 2017
12
December, 2017
12
February, 2020
12
November, 2019
7
August, 2020
7
March, 2020
6
December, 2019
6
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
November, 2018
2
October, 2018
1
June, 2018
Available data
22
bigWig
18
bam
16
tsv
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3+
4
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
Organism
29
Homo sapiens
Biosample type
18
primary cell
11
tissue
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
29
AMP
Genome assembly (visualization)
28
hg19
17
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
29 results
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Clear Filters
total RNA-seq
RRBS
Hi-C
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 9 more…
tissue
frontal cortex
1
1
1
diencephalon
1
1
temporal lobe
1
1
brain
1
cerebellum
1
+ See 2 more…
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