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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
341
transcription factor
290
histone modification
289
histone
177
narrow histone mark
139
control
112
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
37
November, 2017
19
November, 2018
4
December, 2017
1
August, 2021
Available data
60
bam
60
fastq
59
bed narrowPeak
59
bigWig
58
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
61
Homo sapiens
Biosample type
54
cell line
3
primary cell
2
in vitro differentiated cells
2
tissue
Organ
58
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
61
AMP
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
60
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
cell line
HepG2
54
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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