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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ChIP-seq
Assay category
289
DNA binding
Target of assay
341
transcription factor
290
histone modification
289
histone
177
narrow histone mark
139
control
112
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
88
November, 2017
82
October, 2019
32
August, 2017
27
May, 2020
25
May, 2019
17
December, 2017
12
October, 2017
6
August, 2021
Available data
248
bigWig
247
bed narrowPeak
245
bam
157
tagAlign
126
bigBed narrowPeak
54
fastq
26
bed broadPeak
17
bigBed broadPeak
3
bed bed3+
1
tagAlign bed3+
Organism
289
Homo sapiens
Biosample type
253
tissue
18
cell line
12
in vitro differentiated cells
6
primary cell
Organ
187
brain
151
pancreas
102
liver
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
62
heart
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
289
AMP
Genome assembly (visualization)
237
GRCh38
199
hg19
Lab
286
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
tissue
liver
64
layer of hippocampus
20
brain
17
angular gyrus
14
substantia nigra
14
+ See 65 more…
cell line
HepG2
18
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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