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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
17
ATAC-seq
9
total RNA-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
70
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
38
histone
38
histone modification
23
transcription factor
20
broad histone mark
17
narrow histone mark
9
control
4
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
4
May, 2021
2
October, 2019
1
August, 2018
Available data
62
bam
59
bigWig
55
fastq
47
bed narrowPeak
17
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
100
Homo sapiens
Biosample type
1052
tissue
381
primary cell
100
in vitro differentiated cells
92
cell line
1
stem cell
Organ
97
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
100
AMP
Genome assembly (visualization)
75
hg19
56
GRCh38
Lab
96
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
pancreatic PP cell
3
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
white fat cell
1
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