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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
57
ChIP-seq
6
ATAC-seq
6
WGBS
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
57
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
45
August, 2017
18
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
479
bam
462
bigWig
457
tsv
25
fastq
8
tagAlign
6
bed narrowPeak
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
527
Homo sapiens
Biosample type
528
tissue
74
in vitro differentiated cells
32
primary cell
1
stem cell
Organ
528
connective tissue
481
pancreas
469
adipose tissue
318
liver
274
heart
238
brain
230
kidney
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
50
musculature of body
41
nerve
20
lung
18
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
528
AMP
Genome assembly (visualization)
463
hg19
461
GRCh38
Lab
528
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
528 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
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