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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
477
Transcription
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
18
July, 2019
14
February, 2023
8
August, 2017
6
June, 2019
6
November, 2020
5
August, 2021
3
October, 2019
2
February, 2020
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
491
bigWig
487
bam
474
tsv
17
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
8
fastq
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
526
Homo sapiens
Biosample type
473
tissue
30
in vitro differentiated cells
23
primary cell
1
stem cell
Organ
654
pancreas
527
connective tissue
418
adipose tissue
325
epithelium
238
kidney
238
liver
166
heart
159
bone element
128
vasculature
125
blood vessel
105
artery
65
brain
56
eye
56
limb
56
musculature of body
18
ureter
16
skeleton
15
embryo
11
lung
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
526
AMP
1
T1D
Genome assembly (visualization)
509
hg19
487
GRCh38
Lab
522
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
ChIP-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
527 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
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in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
+ See 5 more…
stem cell
mesenchymal stem cell
1
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