Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
26
DNA accessibility
6
DNA methylation
Date released
452
February, 2021
14
February, 2023
10
July, 2019
8
August, 2017
5
August, 2021
3
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
472
bigWig
467
bam
463
tsv
9
bed narrowPeak
8
bed bed3+
8
fastq
7
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
503
Homo sapiens
Biosample type
473
tissue
30
in vitro differentiated cells
primary cell
1
stem cell
Organ
504
connective tissue
452
pancreas
416
adipose tissue
281
kidney
251
heart
229
liver
158
bone element
120
blood vessel
120
vasculature
105
artery
81
epithelium
56
brain
56
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
504
AMP
Genome assembly (visualization)
488
hg19
468
GRCh38
Lab
500
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
504 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download