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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
15
ATAC-seq
7
total RNA-seq
4
WGBS
3
pCHi-C
2
Capture-C
1
RNA microarray
Assay category
15
DNA accessibility
7
Transcription
4
DNA methylation
Date released
14
February, 2023
4
August, 2017
4
February, 2021
3
August, 2021
2
February, 2020
2
March, 2020
1
August, 2018
1
May, 2023
1
November, 2019
Available data
bigWig
467
bam
463
tsv
9
bed narrowPeak
8
bed bed3+
8
fastq
7
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
31
Homo sapiens
Biosample type
20
in vitro differentiated cells
11
tissue
primary cell
1
stem cell
Organ
205
kidney
148
heart
124
pancreas
100
bone element
55
blood vessel
55
vasculature
51
eye
47
artery
47
liver
42
epithelium
32
connective tissue
20
lung
17
brain
16
skeleton
15
musculature of body
13
limb
12
adipose tissue
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
18
hg19
2
GRCh38
Lab
30
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
32 results
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ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
in vitro differentiated cells
adipocyte
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
tissue
adipose tissue
1
1
1
1
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
stem cell
mesenchymal stem cell
1
See all biosamples
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