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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
535
total RNA-seq
ChIP-seq
71
ATAC-seq
18
DNase-seq
10
single cell RNA-seq
8
WGBS
6
Hi-C
6
pCHi-C
3
small RNA-seq
2
Capture-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
548
Transcription
90
DNA accessibility
9
DNA methylation
6
3D chromatin structure
Date released
515
February, 2021
49
February, 2023
29
July, 2019
11
August, 2021
11
June, 2019
10
October, 2019
8
August, 2017
6
March, 2020
6
November, 2020
5
February, 2020
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
572
bam
569
bigWig
546
tsv
73
bed narrowPeak
27
bed bed3+
23
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
11
fastq
6
bed bed3
4
bed bedMethyl
4
bed bedgraph
4
bigBed bedMethyl
3
bedpe bed3+
3
hdf5
3
hic
1
tar
Organism
661
Homo sapiens
Biosample type
533
tissue
60
cell line
38
primary cell
30
in vitro differentiated cells
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
661
AMP
1
T1D
Genome assembly (visualization)
605
GRCh38
596
hg19
Lab
657
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
662 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
Capture-C
FAIRE-seq
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
coronary artery
1
36
2
subcutaneous adipose tissue
7
1
1
1
aorta
1
4
2
1
1
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
osteoblast
5
2
1
1
endothelial cell of umbilical vein
2
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain microvascular endothelial cell
1
1
+ See 12 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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