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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
total RNA-seq
ChIP-seq
45
DNase-seq
33
ATAC-seq
7
WGBS
5
Hi-C
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
488
Transcription
78
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Date released
461
February, 2021
38
June, 2019
23
July, 2019
14
February, 2023
13
October, 2019
8
August, 2017
6
November, 2020
5
August, 2021
5
February, 2020
2
April, 2018
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
540
bam
538
bigWig
485
tsv
61
bed narrowPeak
52
bed bed3+
49
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
11
fastq
6
bed bed3
4
bed bedMethyl
4
bed bedgraph
4
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
586
Homo sapiens
Biosample type
529
tissue
30
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
586
AMP
1
T1D
Genome assembly (visualization)
561
hg19
540
GRCh38
Lab
582
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
587 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
muscle of arm
17
muscle of leg
13
1
subcutaneous adipose tissue
7
1
1
1
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in vitro differentiated cells
adipocyte
5
1
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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stem cell
mesenchymal stem cell
1
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