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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
ChIP-seq
25
ATAC-seq
11
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
Hi-C
3
small RNA-seq
2
Capture-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
481
Transcription
37
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Date released
455
February, 2021
18
July, 2019
14
February, 2023
8
August, 2017
7
October, 2019
6
June, 2019
6
November, 2020
5
August, 2021
3
March, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
498
bigWig
494
bam
478
tsv
20
bed narrowPeak
18
bed bed3+
16
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
fastq
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
hdf5
1
tar
Organism
535
Homo sapiens
Biosample type
473
tissue
32
primary cell
30
in vitro differentiated cells
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
535
AMP
1
T1D
Genome assembly (visualization)
518
hg19
493
GRCh38
Lab
531
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
536 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
Hi-C
small RNA-seq
Capture-C
FAIRE-seq
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
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primary cell
osteoblast
5
2
1
1
endothelial cell of umbilical vein
2
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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