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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
95
ATAC-seq
90
DNase-seq
85
total RNA-seq
63
single cell RNA-seq
6
WGBS
6
pCHi-C
6
snATAC-seq
5
RRBS
4
small RNA-seq
3
RNA microarray
2
Capture-C
2
Hi-C
2
STARR-seq
1
FAIRE-seq
Assay category
95
DNA accessibility
Date released
66
August, 2021
11
May, 2023
10
February, 2023
February, 2021
3
October, 2019
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
71
bed narrowPeak
64
xls
8
bigWig
5
bed bed3
4
bam
4
bed bed3+
4
bigBed narrowPeak
2
fastq
Organism
95
Homo sapiens
Biosample type
81
tissue
13
in vitro differentiated cells
1
primary cell
Organ
152
pancreas
103
epithelium
75
kidney
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
22
liver
20
connective tissue
6
adipose tissue
4
bone element
4
brain
4
skeleton
2
limb
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
95
AMP
Genome assembly (visualization)
79
GRCh38
20
hg19
Lab
75
Katalin Susztak, Upenn
18
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ATAC-seq
tissue
kidney
75
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
in vitro differentiated cells
chondrocyte
5
adipocyte
4
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
osteoblast
1
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