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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
total RNA-seq
282
ChIP-seq
128
ATAC-seq
74
single cell RNA-seq
53
WGBS
28
DNase-seq
9
Hi-C
7
RRBS
6
MeRIP-seq
5
pCHi-C
4
Capture-C
3
small RNA-seq
2
RNA microarray
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
9
3D chromatin structure
Date released
3
July, 2019
3
October, 2022
1
March, 2020
1
November, 2019
1
October, 2019
Available data
6
hic
5
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
Organism
9
Homo sapiens
Biosample type
8
primary cell
1
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
9 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
+ See 2 more…
cell line
EndoC_BH1
1
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