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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
20
ATAC-seq
9
total RNA-seq
5
Hi-C
5
pCHi-C
4
WGBS
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
97
DNA binding
20
DNA accessibility
9
Transcription
5
3D chromatin structure
5
DNA methylation
Target of assay
51
control
46
histone
46
histone modification
28
broad histone mark
18
narrow histone mark
Date released
60
August, 2017
21
October, 2019
18
October, 2018
14
February, 2023
6
July, 2019
5
August, 2021
5
February, 2020
5
February, 2021
3
June, 2019
2
March, 2020
2
May, 2019
1
August, 2018
1
January, 2018
1
May, 2021
Available data
46
bam
26
fastq
22
tagAlign
9
bigWig
8
bed bed3+
7
tsv
5
bed bed3
5
bed narrowPeak
4
bed bedgraph
4
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
143
Homo sapiens
Biosample type
93
tissue
43
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
1
T1D
Genome assembly (visualization)
685
hg19
GRCh38
Lab
139
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
tibial nerve
11
1
omental fat pad
8
1
adipose tissue
1
3
1
1
+ See 4 more…
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
brain pericyte
1
mesenchymal stem cell
1
osteoblast
1
stem cell
mesenchymal stem cell
1
See all biosamples
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