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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
59
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
59
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
51
August, 2017
18
July, 2019
15
June, 2019
6
November, 2020
5
October, 2018
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
513
bigWig
512
bam
473
tsv
30
bed narrowPeak
27
fastq
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
7
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
559
Homo sapiens
Biosample type
523
tissue
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
891
pancreas
669
liver
560
connective tissue
474
epithelium
466
adipose tissue
342
kidney
332
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
559
AMP
1
T1D
Genome assembly (visualization)
516
hg19
512
GRCh38
Lab
559
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
target.investigated_as!
control
BIOSAMPLE
ASSAY
560 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
1
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
31
3
omental fat pad
5
3
1
2
1
subcutaneous adipose tissue
7
2
1
1
1
+ See 4 more…
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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