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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
45
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
45
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
25
August, 2017
23
October, 2018
18
July, 2019
10
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
525
bam
503
bigWig
473
tsv
45
fastq
20
bed narrowPeak
16
bigBed narrowPeak
14
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tagAlign
Organism
545
Homo sapiens
Biosample type
514
tissue
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
793
pancreas
685
liver
546
connective tissue
458
adipose tissue
422
epithelium
324
kidney
290
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
8
embryo
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
545
AMP
1
T1D
Genome assembly (visualization)
506
hg19
503
GRCh38
Lab
545
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
546 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
1
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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