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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
462
total RNA-seq
141
ChIP-seq
20
ATAC-seq
6
WGBS
3
DNase-seq
2
Capture-C
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
464
Transcription
141
DNA binding
23
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
125
August, 2017
23
October, 2018
10
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2017
Available data
556
bam
538
bigWig
462
tsv
98
fastq
57
bed narrowPeak
22
tagAlign
17
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
638
Homo sapiens
Biosample type
546
tissue
93
in vitro differentiated cells
primary cell
Organ
777
liver
639
connective tissue
524
pancreas
488
adipose tissue
340
heart
303
kidney
262
brain
199
blood vessel
199
vasculature
139
artery
121
limb
81
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
epithelium
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
639
AMP
Genome assembly (visualization)
552
hg19
533
GRCh38
Lab
635
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
639 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Capture-C
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 3 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
chondrocyte
5
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
+ See 1 more…
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