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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
119
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
119
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
39
transcription factor
29
control
28
broad histone mark
22
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
103
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
557
bam
538
bigWig
463
tsv
98
fastq
58
bed narrowPeak
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
622
Homo sapiens
Biosample type
539
tissue
83
in vitro differentiated cells
primary cell
1
stem cell
Organ
695
liver
623
connective tissue
581
pancreas
481
adipose tissue
334
heart
318
kidney
193
blood vessel
193
vasculature
158
bone element
147
brain
133
artery
122
limb
115
epithelium
67
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
623
AMP
Genome assembly (visualization)
554
hg19
534
GRCh38
Lab
619
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
623 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 4 more…
in vitro differentiated cells
adipocyte
5
53
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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