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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
2
pCHi-C
2
small RNA-seq
Assay category
461
Transcription
Date released
448
February, 2021
10
July, 2019
2
February, 2020
2
March, 2020
1
May, 2021
Available data
557
bam
538
bigWig
463
tsv
98
fastq
58
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
463
Homo sapiens
Biosample type
457
tissue
primary cell
5
in vitro differentiated cells
1
stem cell
Organ
463
connective tissue
399
adipose tissue
309
pancreas
169
liver
164
heart
66
blood vessel
66
vasculature
58
bone element
56
artery
40
epithelium
23
brain
18
kidney
14
embryo
7
limb
7
musculature of body
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
463
AMP
Genome assembly (visualization)
459
GRCh38
459
hg19
Lab
463
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
463 results
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total RNA-seq
pCHi-C
small RNA-seq
tissue
adipose tissue
381
1
bone tissue
58
subcutaneous adipose tissue
7
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
in vitro differentiated cells
adipocyte
4
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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