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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
76
ChIP-seq
34
ATAC-seq
6
WGBS
5
DNase-seq
5
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
476
Transcription
76
DNA binding
39
DNA accessibility
6
DNA methylation
Target of assay
35
histone
35
histone modification
24
control
20
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
23
October, 2019
10
July, 2019
4
June, 2019
3
February, 2020
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
501
bam
484
bigWig
462
tsv
43
bed narrowPeak
43
fastq
13
bigBed narrowPeak
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
602
Homo sapiens
Biosample type
603
tissue
97
in vitro differentiated cells
44
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
603
AMP
Genome assembly (visualization)
512
hg19
483
GRCh38
Lab
603
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
603 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
3
1
4
subcutaneous adipose tissue
7
12
1
1
1
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