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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
625
total RNA-seq
229
ChIP-seq
27
ATAC-seq
10
WGBS
6
DNase-seq
5
small RNA-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
1
RRBS
1
single cell RNA-seq
Assay category
631
Transcription
229
DNA binding
33
DNA accessibility
11
DNA methylation
1
3D chromatin structure
Target of assay
103
histone modification
102
histone
70
control
57
narrow histone mark
56
transcription factor
45
broad histone mark
7
RNA binding protein
2
chromatin remodeller
Date released
445
February, 2021
193
May, 2020
111
August, 2017
48
December, 2017
40
May, 2022
23
October, 2018
18
July, 2019
8
November, 2018
8
October, 2019
4
March, 2020
3
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
Available data
786
bam
746
bigWig
611
tsv
126
bed narrowPeak
126
fastq
78
tagAlign
59
bigBed narrowPeak
12
bed bed3+
6
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hic
Organism
907
Homo sapiens
Biosample type
908
tissue
401
cell line
112
in vitro differentiated cells
52
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
908
AMP
Genome assembly (visualization)
750
hg19
718
GRCh38
Lab
868
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
908 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
Hi-C
RNA microarray
RRBS
single cell RNA-seq
tissue
adipose tissue
382
2
3
3
1
liver
167
145
20
3
2
1
1
1
1
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
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