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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
50
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
RRBS
1
pCHi-C
Assay category
457
Transcription
50
DNA binding
8
DNA accessibility
7
DNA methylation
Target of assay
33
histone
33
histone modification
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
51
August, 2017
11
July, 2019
5
October, 2018
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
481
bigWig
479
bam
457
tsv
24
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
Organism
523
Homo sapiens
Biosample type
524
tissue
89
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
297
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
524
AMP
Genome assembly (visualization)
483
hg19
480
GRCh38
Lab
524
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
524 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
RRBS
pCHi-C
tissue
adipose tissue
382
1
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
31
3
omental fat pad
5
3
1
2
1
subcutaneous adipose tissue
7
2
1
1
1
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