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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
462
total RNA-seq
141
ChIP-seq
38
DNase-seq
15
ATAC-seq
7
WGBS
4
Hi-C
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
464
Transcription
141
DNA binding
53
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
83
histone
83
histone modification
54
broad histone mark
41
control
29
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
450
February, 2021
73
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
15
July, 2019
7
May, 2019
5
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
613
bam
573
bigWig
464
tsv
106
bed narrowPeak
94
bigBed narrowPeak
43
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
9
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
Organism
670
Homo sapiens
Biosample type
671
tissue
97
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
671
AMP
Genome assembly (visualization)
579
hg19
577
GRCh38
Lab
671
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
671 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
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