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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
41
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
25
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
497
bam
479
bigWig
457
tsv
42
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
tagAlign
Organism
513
Homo sapiens
Biosample type
514
tissue
60
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
514
AMP
Genome assembly (visualization)
480
hg19
479
GRCh38
Lab
514
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
514 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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