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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
71
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
2
Capture-C
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
71
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
56
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
3
October, 2019
2
February, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
531
bam
511
bigWig
462
tsv
72
fastq
31
bed narrowPeak
19
bed bed3+
12
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
3
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
573
Homo sapiens
Biosample type
514
tissue
60
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
574
connective tissue
457
adipose tissue
434
pancreas
295
liver
279
kidney
219
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
24
epithelium
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
574
AMP
Genome assembly (visualization)
528
hg19
508
GRCh38
Lab
570
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
574 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Capture-C
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
+ See 3 more…
in vitro differentiated cells
adipocyte
5
30
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
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