Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
85
RNA microarray
41
ChIP-seq
18
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
461
Transcription
41
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
25
August, 2017
23
October, 2018
10
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
505
bam
479
bigWig
457
tsv
88
txt
42
fastq
19
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
4
bed bed3
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
tagAlign
Organism
613
Homo sapiens
Biosample type
614
tissue
60
in vitro differentiated cells
32
primary cell
1
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
614
AMP
Genome assembly (visualization)
492
hg19
487
GRCh38
Lab
614
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
614 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
tissue
adipose tissue
382
1
3
3
1
bone element
84
bone tissue
58
subcutaneous adipose tissue
7
1
12
1
1
omental fat pad
5
11
1
2
1
+ See 16 more…
See all biosamples
Download