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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
67
ChIP-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
67
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
444
February, 2021
54
August, 2017
18
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
Available data
498
bam
481
bigWig
457
tsv
43
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
533
Homo sapiens
Biosample type
534
tissue
52
in vitro differentiated cells
22
primary cell
1
stem cell
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
534
AMP
Genome assembly (visualization)
469
GRCh38
469
hg19
Lab
534
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
534 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
1
bone tissue
58
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
visceral abdominal adipose tissue
3
islet of Langerhans
1
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