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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
small RNA-seq
Assay category
59
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
52
August, 2017
13
February, 2023
13
June, 2019
11
February, 2021
7
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
79
bam
73
bigWig
46
bed narrowPeak
46
fastq
21
bed bed3+
21
tsv
14
bigBed narrowPeak
10
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
116
Homo sapiens
Biosample type
tissue
81
in vitro differentiated cells
34
primary cell
1
stem cell
Organ
454
epithelium
412
liver
400
pancreas
116
connective tissue
94
vasculature
90
blood vessel
77
heart
68
artery
68
blood
68
bodily fluid
47
kidney
29
embryo
17
brain
16
vein
9
musculature of body
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
115
AMP
1
T1D
Genome assembly (visualization)
90
hg19
70
GRCh38
Lab
111
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bedMethyl
target.investigated_as!
narrow histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
small RNA-seq
in vitro differentiated cells
adipocyte
51
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
3
3
mesenchymal stem cell
5
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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