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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
141
ChIP-seq
23
ATAC-seq
6
WGBS
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
141
DNA binding
23
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
124
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2019
1
October, 2017
Available data
557
bam
538
bigWig
463
tsv
98
fastq
58
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
641
Homo sapiens
Biosample type
545
tissue
96
in vitro differentiated cells
primary cell
1
stem cell
Organ
716
liver
642
connective tissue
593
pancreas
487
adipose tissue
313
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
642
AMP
Genome assembly (visualization)
552
hg19
531
GRCh38
Lab
638
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
642 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
+ See 4 more…
in vitro differentiated cells
adipocyte
5
67
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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