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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
4
single cell RNA-seq
3
ChIP-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
3
DNA binding
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
control
Date released
8
July, 2019
5
November, 2020
3
February, 2021
3
June, 2019
2
April, 2018
2
July, 2018
1
May, 2021
Available data
36
bam
32
bigWig
17
bed narrowPeak
bigBed narrowPeak
15
tsv
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
24
Homo sapiens
Biosample type
537
tissue
94
in vitro differentiated cells
24
primary cell
1
stem cell
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
23
AMP
1
T1D
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
23
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
osteoblast
5
2
1
pancreatic stellate cell
4
cardiac fibroblast
2
1
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
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