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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
16
ATAC-seq
7
total RNA-seq
4
WGBS
4
pCHi-C
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
78
DNA binding
16
DNA accessibility
7
Transcription
5
DNA methylation
Target of assay
43
histone
43
histone modification
35
control
28
broad histone mark
15
narrow histone mark
Date released
60
August, 2017
18
October, 2018
14
February, 2023
5
February, 2021
3
August, 2021
3
June, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
July, 2019
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
593
bam
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
112
Homo sapiens
Biosample type
66
tissue
40
in vitro differentiated cells
6
primary cell
1
stem cell
Organ
176
kidney
169
heart
169
liver
153
pancreas
113
connective tissue
100
bone element
81
epithelium
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
113
AMP
1
T1D
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
111
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
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in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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