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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
16
ATAC-seq
5
total RNA-seq
4
WGBS
3
pCHi-C
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
78
DNA binding
16
DNA accessibility
5
DNA methylation
5
Transcription
Target of assay
43
histone
43
histone modification
35
control
28
broad histone mark
15
narrow histone mark
Date released
60
August, 2017
18
October, 2018
14
February, 2023
5
February, 2021
3
August, 2021
3
June, 2019
1
August, 2018
1
July, 2019
1
May, 2021
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
593
bam
bigWig
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
109
Homo sapiens
Biosample type
63
tissue
40
in vitro differentiated cells
7
primary cell
Organ
314
pancreas
214
epithelium
211
kidney
157
liver
110
connective tissue
101
bone element
71
heart
71
vasculature
70
blood vessel
63
adipose tissue
52
artery
50
brain
50
eye
28
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
109
AMP
1
T1D
Genome assembly (visualization)
22
hg19
4
GRCh38
Lab
107
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bigWig
tsv
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
omental fat pad
8
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
+ See 1 more…
in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
See all biosamples
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