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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
20
ATAC-seq
7
total RNA-seq
3
WGBS
3
pCHi-C
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
20
DNA accessibility
7
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
53
August, 2017
14
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
2
July, 2019
2
March, 2020
1
January, 2018
1
May, 2021
1
May, 2023
Available data
bam
570
bigWig
478
tsv
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
88
Homo sapiens
Biosample type
48
tissue
37
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
210
kidney
187
pancreas
142
heart
138
epithelium
106
liver
93
bone element
89
connective tissue
54
eye
51
vasculature
50
blood vessel
47
adipose tissue
42
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
1
T1D
Genome assembly (visualization)
26
hg19
1
GRCh38
Lab
84
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
fastq
bam
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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