Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
9
DNase-seq
5
ATAC-seq
2
WGBS
1
total RNA-seq
Assay category
75
DNA binding
14
DNA accessibility
2
DNA methylation
1
Transcription
Target of assay
40
transcription factor
34
histone
34
histone modification
17
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
1
control
Date released
65
August, 2017
15
June, 2019
5
October, 2018
2
November, 2020
1
February, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
565
bam
562
bigWig
tsv
75
fastq
71
bed narrowPeak
25
bigBed narrowPeak
19
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
92
Homo sapiens
Biosample type
49
in vitro differentiated cells
26
tissue
17
primary cell
Organ
369
liver
229
pancreas
205
brain
193
kidney
156
heart
148
epithelium
133
vasculature
129
blood vessel
92
connective tissue
92
limb
74
artery
54
blood
54
bodily fluid
47
musculature of body
27
nerve
26
adipose tissue
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
92
AMP
Genome assembly (visualization)
115
hg19
92
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
92 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
in vitro differentiated cells
adipocyte
48
1
tissue
white adipose tissue
12
omental fat pad
3
2
1
adipose tissue
1
2
1
subcutaneous adipose tissue
2
1
adipose tissue(adipose white tissue)
1
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
osteoblast
1
2
brain pericyte
1
hepatic stellate cell
1
Download