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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
2
pCHi-C
1
Hi-C
1
RNA microarray
1
RRBS
1
total RNA-seq
Assay category
86
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
57
August, 2017
23
October, 2018
18
June, 2019
2
February, 2021
2
July, 2019
2
November, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
534
bam
513
bigWig
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
113
Homo sapiens
Biosample type
in vitro differentiated cells
90
tissue
24
primary cell
Organ
602
liver
526
pancreas
346
epithelium
330
kidney
260
brain
185
heart
168
vasculature
162
blood vessel
115
limb
114
connective tissue
101
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
113
AMP
1
T1D
Genome assembly (visualization)
47
hg19
43
GRCh38
Lab
113
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RNA microarray
RRBS
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
2
1
1
brain pericyte
1
1
adult endothelial progenitor cell
1
+ See 1 more…
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