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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
DNase-seq
9
ATAC-seq
Assay category
70
DNA binding
19
DNA accessibility
Target of assay
41
histone
41
histone modification
29
transcription factor
20
broad histone mark
20
narrow histone mark
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
46
August, 2017
15
June, 2019
6
January, 2019
5
November, 2018
5
October, 2018
3
December, 2018
2
August, 2021
2
November, 2020
2
October, 2017
1
February, 2021
1
February, 2023
1
November, 2019
Available data
617
bam
586
bigWig
479
tsv
125
fastq
89
bed narrowPeak
41
bigBed narrowPeak
28
bed bed3+
22
tagAlign
11
bed broadPeak
10
bigBed broadPeak
6
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
1
bedpe bed3+
1
hdf5
Organism
89
Homo sapiens
Biosample type
45
in vitro differentiated cells
27
tissue
17
primary cell
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
89
AMP
Genome assembly (visualization)
88
hg19
85
GRCh38
Lab
87
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
1
osteoblast
1
tissue
spleen
12
1
1
omental fat pad
3
2
1
subcutaneous adipose tissue
2
1
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
+ See 1 more…
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
osteoblast
1
2
brain pericyte
1
hepatic stellate cell
1
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