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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
9
DNase-seq
8
ATAC-seq
Assay category
40
DNA binding
17
DNA accessibility
Target of assay
35
histone
35
histone modification
23
transcription factor
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
32
August, 2017
11
June, 2019
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2021
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
576
bam
552
bigWig
478
tsv
88
fastq
57
bed narrowPeak
27
bed bed3+
23
bigBed narrowPeak
15
tagAlign
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
57
Homo sapiens
Biosample type
33
in vitro differentiated cells
13
primary cell
11
tissue
Organ
390
liver
168
kidney
155
pancreas
126
heart
108
vasculature
105
blood vessel
103
epithelium
97
brain
78
limb
68
artery
57
connective tissue
53
blood
53
bodily fluid
49
musculature of body
32
eye
19
nerve
18
ureter
12
spleen
11
adipose tissue
8
bone element
8
skeleton
8
vein
7
embryo
Project
57
AMP
Genome assembly (visualization)
56
hg19
54
GRCh38
Lab
55
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
Audit category:
6
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte
30
1
1
osteoblast
1
primary cell
cardiac fibroblast
1
3
mesenchymal stem cell
4
osteoblast
1
2
brain pericyte
1
hepatic stellate cell
1
tissue
omental fat pad
3
2
1
subcutaneous adipose tissue
2
1
adipose tissue
1
adipose tissue(adipose white tissue)
1
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