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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
1
3D chromatin structure
Date released
August, 2017
6
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
522
bam
505
bigWig
478
tsv
29
bed narrowPeak
29
fastq
25
bigBed narrowPeak
16
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
16
Homo sapiens
Biosample type
8
primary cell
6
in vitro differentiated cells
2
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
21
epithelium
18
ureter
16
connective tissue
13
vasculature
11
blood vessel
10
liver
10
pancreas
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
16
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
14
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
16 results
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DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
omental fat pad
2
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