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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
7
DNase-seq
6
ATAC-seq
Assay category
13
DNA accessibility
10
DNA binding
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
15
June, 2019
2
August, 2021
2
November, 2020
1
August, 2017
1
February, 2021
1
February, 2023
1
November, 2019
Available data
593
bam
570
bigWig
476
tsv
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
23
Homo sapiens
Biosample type
17
primary cell
4
tissue
2
in vitro differentiated cells
Organ
191
heart
189
brain
183
kidney
129
vasculature
127
blood vessel
92
limb
74
artery
73
epithelium
73
liver
66
pancreas
60
musculature of body
33
eye
27
nerve
23
connective tissue
18
ureter
13
vein
8
bone element
8
skeleton
4
adipose tissue
1
pituitary gland
Project
23
AMP
Genome assembly (visualization)
22
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
month_released!
March, 2020
files.file_type!
fastq
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
osteoblast
1
2
brain pericyte
1
hepatic stellate cell
1
tissue
adipose tissue
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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