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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
total RNA-seq
17
ATAC-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
24
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
8
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
October, 2019
1
August, 2018
1
March, 2020
Available data
95
bam
87
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
21
tsv
16
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
135
Homo sapiens
Biosample type
tissue
95
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
474
epithelium
429
liver
426
pancreas
135
connective tissue
82
vasculature
80
heart
76
blood vessel
69
blood
69
bodily fluid
68
artery
37
embryo
29
kidney
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
1
vein
Project
134
AMP
1
T1D
Genome assembly (visualization)
105
hg19
86
GRCh38
Lab
130
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
5
6
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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