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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
6
WGBS
2
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
117
DNA binding
6
DNA methylation
2
DNA accessibility
2
Transcription
Target of assay
69
histone
69
histone modification
40
broad histone mark
34
transcription factor
28
narrow histone mark
14
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
73
bam
73
fastq
67
bigWig
46
bed narrowPeak
22
tagAlign
11
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
tsv
1
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
68
in vitro differentiated cells
57
tissue
2
primary cell
Organ
227
pancreas
127
connective tissue
62
epithelium
57
adipose tissue
54
liver
26
musculature of body
Project
127
AMP
Genome assembly (visualization)
67
GRCh38
66
hg19
Lab
127
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
subcutaneous adipose tissue
1
primary cell
pancreatic stellate cell
2
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