Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
482
total RNA-seq
304
ChIP-seq
39
DNase-seq
12
ATAC-seq
7
single cell RNA-seq
7
small RNA-seq
6
WGBS
3
Hi-C
3
RRBS
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
496
Transcription
304
DNA binding
52
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
228
histone
228
histone modification
134
narrow histone mark
94
broad histone mark
58
control
21
transcription factor
9
RNA binding protein
Date released
447
February, 2021
91
November, 2017
88
October, 2019
57
August, 2017
47
June, 2019
35
July, 2019
28
May, 2019
23
October, 2018
17
October, 2017
14
February, 2020
6
November, 2020
March, 2020
3
November, 2018
2
April, 2018
2
February, 2023
2
July, 2018
1
August, 2021
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2019
Available data
776
bam
733
bigWig
495
tsv
232
bed narrowPeak
151
bigBed narrowPeak
126
tagAlign
67
fastq
55
bed broadPeak
47
bed bed3+
45
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
3
hdf5
2
bed bed3
1
tagAlign bed3+
Organism
866
Homo sapiens
Biosample type
809
tissue
in vitro differentiated cells
58
primary cell
Organ
929
pancreas
773
liver
585
connective tissue
494
epithelium
489
adipose tissue
385
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
866
AMP
1
T1D
Genome assembly (visualization)
728
GRCh38
678
hg19
Lab
866
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
16
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
March, 2020
BIOSAMPLE
ASSAY
867 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
brain
1
20
14
1
1
layer of hippocampus
23
+ See 84 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
+ See 13 more…
See all biosamples
Download