Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
ChIP-seq
ATAC-seq
9
DNase-seq
6
WGBS
6
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
9
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
450
February, 2021
18
July, 2019
7
August, 2017
6
June, 2019
5
November, 2020
4
February, 2023
3
August, 2021
3
March, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
May, 2021
1
August, 2018
1
May, 2023
1
November, 2018
Available data
486
bam
486
bigWig
479
tsv
12
bed bed3+
9
bed broadPeak
9
bed narrowPeak
9
bigBed broadPeak
9
bigBed narrowPeak
9
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
506
Homo sapiens
Biosample type
468
tissue
25
primary cell
13
in vitro differentiated cells
1
stem cell
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
506
AMP
1
T1D
Genome assembly (visualization)
488
hg19
486
GRCh38
Lab
504
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
507 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
omental fat pad
5
2
1
subcutaneous abdominal adipose tissue
3
+ See 2 more…
primary cell
osteoblast
5
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 6 more…
in vitro differentiated cells
adipocyte
5
1
1
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
preadipocyte
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download