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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
DNase-seq
4
ATAC-seq
Assay category
15
DNA binding
4
DNA accessibility
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
9
June, 2019
5
October, 2018
3
October, 2019
2
August, 2017
Available data
584
bam
561
bigWig
479
tsv
99
fastq
66
bed narrowPeak
22
tagAlign
19
bed bed3+
19
bigBed narrowPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
hdf5
Organism
19
Homo sapiens
Biosample type
9
primary cell
8
tissue
2
in vitro differentiated cells
Organ
353
liver
95
brain
83
pancreas
72
vasculature
70
blood vessel
64
heart
59
epithelium
54
blood
54
bodily fluid
48
limb
25
kidney
24
nerve
21
artery
19
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
0
esophagus
Project
19
AMP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
ATAC-seq
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
tissue
omental fat pad
3
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
2
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