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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
137
ChIP-seq
11
DNase-seq
6
ATAC-seq
4
single cell RNA-seq
3
small RNA-seq
2
WGBS
1
pCHi-C
Assay category
137
DNA binding
17
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
58
histone
58
histone modification
40
transcription factor
39
control
32
broad histone mark
25
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
71
August, 2017
38
October, 2019
23
October, 2018
18
June, 2019
3
July, 2019
2
April, 2018
2
February, 2021
2
July, 2018
2
November, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
164
bam
130
bigWig
102
bed narrowPeak
101
fastq
54
bigBed narrowPeak
29
bed bed3+
22
tagAlign
12
bed broadPeak
11
bigBed broadPeak
9
tsv
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
164
Homo sapiens
Biosample type
84
tissue
54
in vitro differentiated cells
26
primary cell
Organ
522
liver
359
pancreas
241
epithelium
238
brain
142
heart
133
kidney
127
vasculature
126
connective tissue
122
blood vessel
110
limb
60
blood
60
bodily fluid
53
musculature of body
48
artery
47
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
164
AMP
Genome assembly (visualization)
125
GRCh38
123
hg19
Lab
164
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
omental fat pad
11
2
1
1
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
2
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in vitro differentiated cells
adipocyte
53
1
primary cell
cardiac fibroblast
5
3
mesenchymal stem cell
7
osteoblast
1
2
1
pancreatic stellate cell
4
brain pericyte
1
+ See 2 more…
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